DNA Hairpin Stabilization on a Hydrophobic Surface
نویسندگان
چکیده
منابع مشابه
Protein stabilization by hydrophobic interactions at the surface.
The contribution of the solvent-exposed residue 63 to thermal stability of the thermolysin-like neutral protease of Bacillus stearothermophilus was studied by analyzing the effect of twelve different amino acid substitutions at this position. The thermal stability of the enzyme was increased considerably by introducing Arg, Lys or bulky hydrophobic amino acids. In general, the effects of the mu...
متن کاملMelting of a DNA hairpin without hyperchromism.
UV absorbance spectroscopy is the most common method for detecting nucleic acid structural transitions and obtaining thermodynamic parameters. UV-detected melting has been used to determine stabilities of nucleic acid hairpins, duplexes, triplexes, and higher order structures and to determine thermodynamic effects of unusual or modified bases and mismatched base-pairs. We report that in some ca...
متن کاملUnspecific hydrophobic stabilization of folding transition states.
Here we present a method for determining the inference of non-native conformations in the folding of a small domain, alpha-spectrin Src homology 3 domain. This method relies on the preservation of all native interactions after Tyr/Phe exchanges in solvent-exposed, contact-free positions. Minor changes in solvent exposure and free energy of the denatured ensemble are in agreement with the revers...
متن کاملTn10 Transposition via a DNA Hairpin Intermediate
We present evidence that excision of the nonreplicative transposon Tn10 involves three distinct chemical steps, first-strand nicking, hairpin formation, and hairpin resolution. This three-step mechanism makes it possible for a single protein-active site to cleave two DNA strands of opposite polarity, as appears to be the case in this reaction. We infer the existence of alternating bifunctionali...
متن کاملPredrying transition on a hydrophobic surface: statics and dynamics.
For one-component fluids, we examine the predrying phase transition between a thin and thick low-density layer in liquid on a wall repelling the fluid. This is the case of a hydrophobic wall for water. A predrying line starts from the coexistence curve and ends at a surface critical point in the phase diagram. We calculate this line numerically using the van der Waals model and analytically usi...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Small
سال: 2012
ISSN: 1613-6810
DOI: 10.1002/smll.201202335